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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_11953034_11953479_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11953034 - 11953479
Intron Length:
446

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
TATTCCTGCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
TCTTCCTTATAT
Flanking Amino Acid:
KVGIFDTFSSSAKNKPPQIS
Intron Amino Acid Position:
457

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.7
33.7
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
73.3
0.52
0.9
65.7
40.6
Minor 5ss
32.8
-2
2.9
39.4
46.1
Minor BPS
69.9
0.7
1.7
85.22
41.1

Associated Gene:

Gene:
GEMIN5
Ensembl Gene ID:
ENSAPLG00000006816
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007100
11947764 - 11966978
19215