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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_11955536_11955929_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11955536 - 11955929
Intron Length:
394

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TCTTACATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
CTGTTCTTACAT
Flanking Amino Acid:
GKLLALGNEDGSIEIFQAPS
Intron Amino Acid Position:
558

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
80.5
35
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
81.5
0.71
0.8
78.2
34.6
Minor 5ss
56.3
0.21
2.4
67
44.2
Minor BPS
56.3
0.28
1.8
72.17
44.9

Associated Gene:

Gene:
GEMIN5
Ensembl Gene ID:
ENSAPLG00000006816
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007100
11947764 - 11966978
19215