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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_11957569_11958069_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11957569 - 11958069
Intron Length:
501

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAATAATT
5'SS Class:
major
3'SS Sequence:
CTTAACTCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
AATCACTTAACT
Flanking Amino Acid:
MELPDKVSTPASKDVSSSAS
Intron Amino Acid Position:
799

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1
79.2
34
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
72.3
0.5
0.9
65
35.9
Minor 5ss
39.6
-1.2
3.1
55.6
42.7
Minor BPS
71
0.74
1.5
82.96
37

Associated Gene:

Gene:
GEMIN5
Ensembl Gene ID:
ENSAPLG00000006816
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007100
11947764 - 11966978
19215