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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_11965058_11965509_F

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11965058 - 11965509
Intron Length:
452

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTTGACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
CTTTTCTTGACA
Flanking Amino Acid:
KPSSDKSQINGKDEVKETIT
Intron Amino Acid Position:
1449

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
1
78.8
38.3
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
82.6
0.73
0.9
79.7
32.4
Minor 5ss
49.3
-0
2.8
65.3
45.9
Minor BPS
78.3
0.89
1.1
81.71
33.5

Associated Gene:

Gene:
GEMIN5
Ensembl Gene ID:
ENSAPLG00000006816
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007100
11947764 - 11966978
19215