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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_11969921_11970563_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11969921 - 11970563
Intron Length:
643

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTGGCA
5'SS Class:
major
3'SS Sequence:
GTTTTCACTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTGTACAAAACA
Flanking Amino Acid:
YLMKSCKNLKGGLQEVADQL
Intron Amino Acid Position:
207

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.3
0.45
1.1
59.7
39.3
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
81.1
0.7
0.8
74.9
34.7
Minor 5ss
28.5
-2.5
3.6
39.4
46
Minor BPS
49.4
-0
2.1
69.34
42.7

Associated Gene:

Gene:
CNOT8
Ensembl Gene ID:
ENSAPLG00000007128
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007408
11968632 - 11974542
5911