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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_11970709_11970941_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11970709 - 11970941
Intron Length:
233

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTTGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGGTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
GCCTGTTTATCT
Flanking Amino Acid:
SDSVKWLSFHSGYDFGYMVK
Intron Amino Acid Position:
158

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
1
69.7
43.7
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
82.6
0.73
0.9
81.2
36.5
Minor 5ss
38.2
-1.3
3.1
49.2
47.1
Minor BPS
48.1
-0
2
63.63
47

Associated Gene:

Gene:
CNOT8
Ensembl Gene ID:
ENSAPLG00000007128
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007408
11968632 - 11974542
5911