About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_11979778_11980213_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
11979778 - 11980213
Intron Length:
436

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATAGAG
5'SS Class:
major
3'SS Sequence:
CTTCTTATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
CACTTCTTATTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
67.9
37.3
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
87
0.83
0.7
85.1
28
Minor 5ss
29.8
-2.3
3.3
38.1
46.8
Minor BPS
56.9
0.29
1.6
67.92
43.7

Associated Gene:

Gene:
FAXDC2
Ensembl Gene ID:
ENSAPLG00000007416
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007692
11976652 - 11988053
11402