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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_11980262_11983040_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11980262 - 11983040
Intron Length:
2779

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGACT
5'SS Class:
strong_major
3'SS Sequence:
TGCTTGCTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTAAT
U12 Branch Point Sequence:
ATATACTTAATT
Flanking Amino Acid:
YSTMAAQQKQEEKLWDAVKT
Intron Amino Acid Position:
17

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
78.5
35.4
Major BPS
78.2
0.7
1
77.9
32.1
Major PPT
74.7
0.56
0.9
68.1
37.6
Minor 5ss
34.3
-1.8
3.3
49.5
46.5
Minor BPS
73.7
0.82
1.4
84.69
35.3

Associated Gene:

Gene:
FAXDC2
Ensembl Gene ID:
ENSAPLG00000007416
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007692
11976652 - 11988053
11402