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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_11983133_11983234_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11983133 - 11983234
Intron Length:
102

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGATTG
5'SS Class:
major
3'SS Sequence:
TTTACTCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTGAA
U12 Branch Point Sequence:
AAGTCACTAACA
Flanking Amino Acid:
IFTAFMNSASWYVQKIWETS
Intron Amino Acid Position:
47

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
0.9
70.3
36.4
Major BPS
72.1
0.55
1.2
63.4
44.3
Major PPT
79.1
0.65
0.8
73.1
31.7
Minor 5ss
36.3
-1.6
3.2
44.2
44.6
Minor BPS
52.1
0.06
1.9
65.52
40

Associated Gene:

Gene:
FAXDC2
Ensembl Gene ID:
ENSAPLG00000007416
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007692
11976652 - 11988053
11402