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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_11983339_11984075_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11983339 - 11984075
Intron Length:
737

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
CCTCATGTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
CTTTCCTCATGT
Flanking Amino Acid:
EGKEWSLFLFGAALVPALAF
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
76.2
28.3
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
70.3
0.46
0.9
63.3
36.7
Minor 5ss
35.2
-1.7
2.8
40.3
40.2
Minor BPS
51.9
0.14
2.1
75.91
46.6

Associated Gene:

Gene:
FAXDC2
Ensembl Gene ID:
ENSAPLG00000007416
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007692
11976652 - 11988053
11402