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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_11985528_11986565_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11985528 - 11986565
Intron Length:
1038

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTAAGTGAT
5'SS Class:
major
3'SS Sequence:
TTCTCATTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
GACCCATTAACA
Flanking Amino Acid:
SIYAHPLEHILSNTLPVMTG
Intron Amino Acid Position:
227

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
76.9
31.6
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
85.3
0.79
0.8
77.2
36
Minor 5ss
36.2
-1.6
3.3
50.7
41.2
Minor BPS
58.7
0.27
1.6
64.62
40.8

Associated Gene:

Gene:
FAXDC2
Ensembl Gene ID:
ENSAPLG00000007416
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007692
11976652 - 11988053
11402