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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_11996349_11996489_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11996349 - 11996489
Intron Length:
141

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGAG
5'SS Class:
strong_major
3'SS Sequence:
CTCCTGTTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCGCAT
U12 Branch Point Sequence:
AGTGTCTGAGCA
Flanking Amino Acid:
LAVEDGKEGYRYGLECLFRY
Intron Amino Acid Position:
922

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
66
40.1
Major BPS
49.4
-0
1.4
59.3
39.1
Major PPT
76
0.59
0.8
67.7
37.7
Minor 5ss
28.4
-2.5
3.5
37
47.6
Minor BPS
47.9
-0.1
1.8
59.18
40.4

Associated Gene:

Gene:
LARP1
Ensembl Gene ID:
ENSAPLG00000007559
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007862
11993260 - 12031776
38517