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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_11997546_11997643_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11997546 - 11997643
Intron Length:
98

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGACCA
5'SS Class:
major
3'SS Sequence:
CTTTGTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
CGTTCCTGATGC
Flanking Amino Acid:
VKEGRTIDAKTPRKRKTRHS
Intron Amino Acid Position:
788

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.6
1
61.3
39.3
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
86.3
0.82
0.8
80.6
31.4
Minor 5ss
25.4
-2.8
3.1
30.7
42.7
Minor BPS
47.7
-0.1
2
59.84
45

Associated Gene:

Gene:
LARP1
Ensembl Gene ID:
ENSAPLG00000007559
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007862
11993260 - 12031776
38517