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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_11997850_11998403_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11997850 - 11998403
Intron Length:
554

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGAC
5'SS Class:
strong_major
3'SS Sequence:
TTTATCTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GGTTTAT
U12 Branch Point Sequence:
TCCGTCTGACAC
Flanking Amino Acid:
VPPGPPRFQQVPTDALANKL
Intron Amino Acid Position:
719

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
78.6
28.9
Major BPS
63.5
0.34
1.4
57.4
49.1
Major PPT
86.8
0.83
0.7
81.6
30.3
Minor 5ss
30.7
-2.2
3.3
40.8
45.7
Minor BPS
42.3
-0.6
1.8
47.17
42.5

Associated Gene:

Gene:
LARP1
Ensembl Gene ID:
ENSAPLG00000007559
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007862
11993260 - 12031776
38517