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Intron Name: Anas_platyrhynchos_platyrhynchos_14_11998528_11999521_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11998528 - 11999521

Intron Length:

994

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGGGCG

5'SS Class:

strong_major

3'SS Sequence:

TCTTCCAATGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCCAAT

U12 Branch Point Sequence:

GGTTGCTTCATC

Flanking Amino Acid:

QFEPEYSQIKQEVENFKKVN

Intron Amino Acid Position:

678

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.5

0.79

0.9

66.5

39.1

Major BPS

71.8

0.54

1.2

32.5

Major PPT

76.3

0.59

0.9

70.9

33.5

Minor 5ss

24.1

-3

3.2

29.4

43.5

Minor BPS

49.4

-0

2.2

63.58

42.3

Associated Gene:

Gene:

LARP1

Ensembl Gene ID:

ENSAPLG00000007559

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007862

11993260 - 12031776

38517