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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_11999882_12000044_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11999882 - 12000044
Intron Length:
163

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGTAGC
5'SS Class:
strong_major
3'SS Sequence:
CCCCCACCTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTCAC
U12 Branch Point Sequence:
CCTCCCCCACCT
Flanking Amino Acid:
RPRPSPARPKKPEESKTPQQ
Intron Amino Acid Position:
558

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
74
36.6
Major BPS
64.9
0.37
1
67
29.8
Major PPT
69.2
0.43
0.8
60.9
28.1
Minor 5ss
36.7
-1.5
2.6
45.3
42.8
Minor BPS
43.9
-0.3
2.1
62.27
47.2

Associated Gene:

Gene:
LARP1
Ensembl Gene ID:
ENSAPLG00000007559
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007862
11993260 - 12031776
38517