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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_12000215_12000729_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12000215 - 12000729
Intron Length:
515

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TTCACAACTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAA
U12 Branch Point Sequence:
TCCTCCTAAAAC
Flanking Amino Acid:
VPRQSFQKETESAPGSPRPA
Intron Amino Acid Position:
501

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.2
1.02
0.7
86.6
22.2
Major BPS
72.7
0.57
1
72.1
31.1
Major PPT
70.1
0.45
0.9
59.8
40.5
Minor 5ss
30.8
-2.2
3.2
39.9
46.1
Minor BPS
59
0.26
1.8
67.09
44.5

Associated Gene:

Gene:
LARP1
Ensembl Gene ID:
ENSAPLG00000007559
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007862
11993260 - 12031776
38517