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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_12001271_12001501_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12001271 - 12001501
Intron Length:
231

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGCGCC
5'SS Class:
major
3'SS Sequence:
GTTGTCCGTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAT
U12 Branch Point Sequence:
GTGCCTCTCACT
Flanking Amino Acid:
ELLKDYIKRQIEYYFSVDNL
Intron Amino Acid Position:
394

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1.1
67.9
38.9
Major BPS
71.2
0.53
1
61
37.5
Major PPT
72.4
0.5
1
66
40.8
Minor 5ss
40
-1.1
3.4
55.9
41.8
Minor BPS
46.9
-0.1
2
66.77
43.8

Associated Gene:

Gene:
LARP1
Ensembl Gene ID:
ENSAPLG00000007559
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007862
11993260 - 12031776
38517