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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_12002566_12002726_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12002566 - 12002726
Intron Length:
161

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGCGCT
5'SS Class:
major
3'SS Sequence:
CCGTCTGCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTAAC
U12 Branch Point Sequence:
TGTTCCCCGTCT
Flanking Amino Acid:
HPSNNRGELKGWHPDNKHER
Intron Amino Acid Position:
292

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1
65.8
40.2
Major BPS
62.2
0.3
1.2
65
38.7
Major PPT
71.4
0.48
0.9
64.8
36.4
Minor 5ss
32.1
-2
3.6
47.1
48.5
Minor BPS
39.4
-0.7
3.6
73.46
43.2

Associated Gene:

Gene:
LARP1
Ensembl Gene ID:
ENSAPLG00000007559
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007862
11993260 - 12031776
38517