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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_12002859_12003586_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12002859 - 12003586
Intron Length:
728

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACGCAG
5'SS Class:
major
3'SS Sequence:
TGTCCTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAA
U12 Branch Point Sequence:
TGTGTCACACCC
Flanking Amino Acid:
DNQKSAQKKKGNKHKWVPLQ
Intron Amino Acid Position:
248

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.2
60.5
45.8
Major BPS
69.8
0.49
1
61
37.5
Major PPT
85.7
0.8
0.8
80.4
31.6
Minor 5ss
35.6
-1.6
3.3
46.7
48.6
Minor BPS
42.4
-0.6
2
55.77
42.5

Associated Gene:

Gene:
LARP1
Ensembl Gene ID:
ENSAPLG00000007559
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007862
11993260 - 12031776
38517