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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_12003759_12004662_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12003759 - 12004662
Intron Length:
904

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAACA
5'SS Class:
strong_major
3'SS Sequence:
ATTGATATCTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TTTTCCTGTATT
Flanking Amino Acid:
PGEIAHKSVQQPHKAPSLRK
Intron Amino Acid Position:
191

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.8
79.5
28.2
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
71.1
0.47
1
67.1
42.9
Minor 5ss
28.3
-2.5
2.7
32.3
41.9
Minor BPS
68.6
0.67
1.8
89.01
35.5

Associated Gene:

Gene:
LARP1
Ensembl Gene ID:
ENSAPLG00000007559
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007862
11993260 - 12031776
38517