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Intron Name: Anas_platyrhynchos_platyrhynchos_14_12006034_12016618_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12006034 - 12016618

Intron Length:

10585

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTATGTATT

5'SS Class:

strong_major

3'SS Sequence:

CCTCCTTCTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGTTAAC

U12 Branch Point Sequence:

TGGGTGTTAACA

Flanking Amino Acid:

PDIFPADGQSEQTTPAKVVR

Intron Amino Acid Position:

148

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.8

0.9

85.3

31.1

Major BPS

74.5

0.61

1.1

75.6

36.6

Major PPT

81.7

0.71

0.7

76.1

25.9

Minor 5ss

47.9

-0.2

2.5

65.4

40.1

Minor BPS

49.6

-0

2.2

63.04

43.6

Associated Gene:

Gene:

LARP1

Ensembl Gene ID:

ENSAPLG00000007559

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007862

11993260 - 12031776

38517