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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_12101947_12104015_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12101947 - 12104015
Intron Length:
2069

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCCTAGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAG
U12 Branch Point Sequence:
TTTGTCCTAGCA
Flanking Amino Acid:
RGEAAWNNVQVFTFSWREDI
Intron Amino Acid Position:
437

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.1
0.99
0.8
86
30.3
Major BPS
54.8
0.12
1.6
53.3
44.2
Major PPT
78.9
0.65
0.9
74.9
34.7
Minor 5ss
35.2
-1.7
3.8
55
49.2
Minor BPS
51.4
0.04
2
71.54
40.7

Associated Gene:

Gene:
GALNT10
Ensembl Gene ID:
ENSAPLG00000007938
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046407
12099911 - 12140470
40560
ENSAPLT00000008263
12100911 - 12185537
84627