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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_12117831_12135759_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12117831 - 12135759
Intron Length:
17929

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGATAA
5'SS Class:
strong_major
3'SS Sequence:
CGTTTTCATACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
AGTGTTTTACTT
Flanking Amino Acid:
IVLVDDFSDREHLKKRLEDY
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
75.7
29.3
Major BPS
100
1.24
0.5
100
0
Major PPT
78.7
0.65
0.9
73
36.5
Minor 5ss
43.3
-0.7
2.8
55.5
48.7
Minor BPS
49.6
0.05
1.7
65.71
40

Associated Gene:

Gene:
GALNT10
Ensembl Gene ID:
ENSAPLG00000007938
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046407
12099911 - 12140470
40560
ENSAPLT00000008263
12100911 - 12185537
84627