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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_12199637_12199748_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
12199637 - 12199748
Intron Length:
112

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTGTG
5'SS Class:
strong_major
3'SS Sequence:
GTGATTGTCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTGAT
U12 Branch Point Sequence:
CTTTCTGTGATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
77.9
36.9
Major BPS
68.9
0.47
1.2
60.7
45.9
Major PPT
67.6
0.4
1
60.5
44.7
Minor 5ss
42.4
-0.8
3.1
57.3
47.4
Minor BPS
56.6
0.29
2
78.01
39.5

Associated Gene:

Gene:
FAM114A2
Ensembl Gene ID:
ENSAPLG00000008179
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008532
12199494 - 12208593
9100