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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_12205602_12206337_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12205602 - 12206337
Intron Length:
736

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTTCA
5'SS Class:
major
3'SS Sequence:
TTTTCTTGCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
TTTTCTTGCACA
Flanking Amino Acid:
TATDRAKSLSQLTIVLCKEL
Intron Amino Acid Position:
426

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1
71.7
34.4
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
83.1
0.74
0.8
79.7
32.4
Minor 5ss
42.7
-0.8
2.7
56.3
41.9
Minor BPS
62.9
0.4
1.9
80.01
36.1

Associated Gene:

Gene:
FAM114A2
Ensembl Gene ID:
ENSAPLG00000008179
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037774
12199749 - 12214502
14754
ENSAPLT00000008532
12199494 - 12208593
9100