About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_12207027_12207752_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12207027 - 12207752
Intron Length:
726

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
ATTATTTTCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTCTTTTTAAAA
Flanking Amino Acid:
NPLITGVFLEASNSASYIQD
Intron Amino Acid Position:
469

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
1.2
84
30.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
77.7
0.62
0.8
73
36.7
Minor 5ss
37.3
-1.4
2.8
49.7
46.6
Minor BPS
70.1
0.63
1.3
75.65
35.9

Associated Gene:

Gene:
FAM114A2
Ensembl Gene ID:
ENSAPLG00000008179
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008532
12199494 - 12208593
9100