Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_12207027_12213370_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12207027 - 12213370

Intron Length:

6344

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTCAGTTAT

5'SS Class:

strong_major

3'SS Sequence:

CACTTGCTCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

ATTTCTTTAATT

Flanking Amino Acid:

NPLITGVFLEVGLEVVLRHL

Intron Amino Acid Position:

469

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.1

0.78

1.2

30.2

Major BPS

90.4

0.7

90.2

19.3

Major PPT

70.6

0.46

0.9

61.1

39.8

Minor 5ss

37.3

-1.4

2.8

49.7

46.6

Minor BPS

86.2

1.21

0.8

94.15

26.1

Associated Gene:

Gene:

FAM114A2

Ensembl Gene ID:

ENSAPLG00000008179

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037774

12199749 - 12214502

14754