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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_12229004_12229507_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12229004 - 12229507
Intron Length:
504

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCGGA
5'SS Class:
strong_major
3'SS Sequence:
TTCTGCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTTCTCATAGTC
Flanking Amino Acid:
VCKAEPTEHEGFFRKGKVLL
Intron Amino Acid Position:
164

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
68.5
38.7
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
85.8
0.81
0.8
80.4
31.6
Minor 5ss
30.3
-2.3
3.3
38
46.8
Minor BPS
50.7
0
1.8
68.53
36.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008439
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046249
12225303 - 12235098
9796
ENSAPLT00000008758
12225303 - 12235862
10560