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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_12229004_12230177_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12229004 - 12230177
Intron Length:
1174

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCGGA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCCTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAG
U12 Branch Point Sequence:
TGAGCCCCATTT
Flanking Amino Acid:
VCKAEPTEHEILAQEDAARP
Intron Amino Acid Position:
164

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
68.5
38.7
Major BPS
52.2
0.06
1.6
51.1
46.3
Major PPT
85.8
0.81
0.6
81.6
23.2
Minor 5ss
30.3
-2.3
3.3
38
46.8
Minor BPS
41.8
-0.5
2
58.75
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008439
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040554
12225303 - 12235862
10560