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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_12230289_12231083_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12230289 - 12231083
Intron Length:
795

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGAC
5'SS Class:
strong_major
3'SS Sequence:
TTGCTGTGTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTATCAG
U12 Branch Point Sequence:
TCAGGCTCGATT
Flanking Amino Acid:
DPASPSARAQDQEEELEASR
Intron Amino Acid Position:
242

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
78.6
28.9
Major BPS
48.6
-0
1.7
59.7
46.7
Major PPT
74.9
0.56
1
72.8
42.2
Minor 5ss
30.7
-2.2
3.3
40.8
45.7
Minor BPS
44.3
-0.3
2
59.33
44.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008439
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046249
12225303 - 12235098
9796
ENSAPLT00000040554
12225303 - 12235862
10560
ENSAPLT00000008758
12225303 - 12235862
10560