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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_12233743_12234415_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12233743 - 12234415
Intron Length:
673

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCACC
5'SS Class:
strong_major
3'SS Sequence:
TTGCTCCCTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAG
U12 Branch Point Sequence:
CCCTGCTCAGGC
Flanking Amino Acid:
FGMCVYETGKSFADYGCMLE
Intron Amino Acid Position:
447

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
74.9
35.3
Major BPS
55.8
0.14
1.6
65.3
43.7
Major PPT
79.2
0.66
0.8
70.3
36.3
Minor 5ss
35.2
-1.7
2.8
43.7
43.7
Minor BPS
37.7
-0.9
2.2
41.44
45.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008439
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040554
12225303 - 12235862
10560
ENSAPLT00000008758
12225303 - 12235862
10560
ENSAPLT00000046249
12225303 - 12235098
9796