Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_12234579_12234723_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12234579 - 12234723

Intron Length:

145

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGGGCA

5'SS Class:

strong_major

3'SS Sequence:

TTTCCCCCCACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCCCAT

U12 Branch Point Sequence:

TTTCCCCCCACA

Flanking Amino Acid:

ADIEYLEDKKVAGEELQELQ

Intron Amino Acid Position:

502

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.82

0.9

71.8

33.2

Major BPS

59.7

0.24

1.3

68.6

38.9

Major PPT

79.2

0.66

0.7

73.1

25.2

Minor 5ss

24.1

-3

3.2

29.7

43.3

Minor BPS

47.6

-0.1

2.3

70.3

41.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000008439

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040554

12225303 - 12235862

10560

ENSAPLT00000008758

12225303 - 12235862

10560

ENSAPLT00000046249

12225303 - 12235098

9796