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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_12279764_12298207_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12279764 - 12298207
Intron Length:
18444

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTTAC
5'SS Class:
strong_major
3'SS Sequence:
CCTCTGTGCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TCCAGTCTGACT
Flanking Amino Acid:
FMQQGCDISPRSLSGRIVGG
Intron Amino Acid Position:
539

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
74.5
32.2
Major BPS
85
0.87
0.8
85.6
23
Major PPT
68.8
0.42
1
63.1
37.1
Minor 5ss
33.7
-1.9
3.1
42.4
45.1
Minor BPS
43.6
-0.4
2
59.93
44

Associated Gene:

Gene:
GRIA1
Ensembl Gene ID:
ENSAPLG00000008617
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019166
12263697 - 12384377
120681
ENSAPLT00000018207
12263697 - 12384377
120681
ENSAPLT00000040467
12263697 - 12421219
157523
ENSAPLT00000008964
12263697 - 12421219
157523
ENSAPLT00000035425
12263697 - 12396174
132478
ENSAPLT00000031091
12263697 - 12384377
120681