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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_12299923_12300876_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12299923 - 12300876
Intron Length:
954

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTAAGTGCT
5'SS Class:
major
3'SS Sequence:
TTCTCTGTGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCAATAT
U12 Branch Point Sequence:
TGAGGCTCAATA
Flanking Amino Acid:
NRTYIVTTILEDPYVMLKKN
Intron Amino Acid Position:
347

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
74.3
34.1
Major BPS
54.9
0.12
1.2
51.6
42.3
Major PPT
74.3
0.55
1
68.7
42
Minor 5ss
37.2
-1.4
3.3
52.3
39.5
Minor BPS
46.6
-0.2
2
57.1
42.4

Associated Gene:

Gene:
GRIA1
Ensembl Gene ID:
ENSAPLG00000008617
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018207
12263697 - 12384377
120681
ENSAPLT00000040467
12263697 - 12421219
157523
ENSAPLT00000008964
12263697 - 12421219
157523
ENSAPLT00000035425
12263697 - 12396174
132478
ENSAPLT00000031091
12263697 - 12384377
120681
ENSAPLT00000019166
12263697 - 12384377
120681