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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_12300988_12303133_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12300988 - 12303133
Intron Length:
2146

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACAAAG
5'SS Class:
major
3'SS Sequence:
TTGTCTTTGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATACCAA
U12 Branch Point Sequence:
TTGTCTTTGGCA
Flanking Amino Acid:
IEMKHDGIRKIGYWNEDEKL
Intron Amino Acid Position:
310

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1.1
71.6
40.1
Major BPS
49
-0
1.2
58.8
37.4
Major PPT
79
0.65
1
76.8
37.3
Minor 5ss
38.4
-1.3
2.9
48.5
47.2
Minor BPS
47.4
-0.2
3.5
73.66
38.8

Associated Gene:

Gene:
GRIA1
Ensembl Gene ID:
ENSAPLG00000008617
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035425
12263697 - 12396174
132478
ENSAPLT00000031091
12263697 - 12384377
120681
ENSAPLT00000018207
12263697 - 12384377
120681
ENSAPLT00000008964
12263697 - 12421219
157523
ENSAPLT00000040467
12263697 - 12421219
157523