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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_12300988_12306773_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12300988 - 12306773
Intron Length:
5786

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGCAAC
5'SS Class:
major
3'SS Sequence:
TTGTCTTTGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATACCAA
U12 Branch Point Sequence:
TTGTCTTTGGCA
Flanking Amino Acid:
GIDIQRALQQIGYWNEDEKL
Intron Amino Acid Position:
344

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.1
0.48
1.2
66.1
39.4
Major BPS
49
-0
1.2
58.8
37.4
Major PPT
79
0.65
1
76.8
37.3
Minor 5ss
42.1
-0.9
2.5
51.9
45
Minor BPS
47.4
-0.2
3.5
73.66
38.8

Associated Gene:

Gene:
GRIA1
Ensembl Gene ID:
ENSAPLG00000008617
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019166
12263697 - 12384377
120681