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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_12303239_12306773_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12303239 - 12306773
Intron Length:
3535

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGCAAC
5'SS Class:
major
3'SS Sequence:
TTACGTCTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
TCTCTCATATTT
Flanking Amino Acid:
GIDIQRALQQVRFEGLSGNV
Intron Amino Acid Position:
275

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.1
0.48
1.2
66.1
39.4
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
69
0.43
1.1
72
38.1
Minor 5ss
42.1
-0.9
2.5
51.9
45
Minor BPS
48.8
-0
1.8
69.66
41.7

Associated Gene:

Gene:
GRIA1
Ensembl Gene ID:
ENSAPLG00000008617
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031091
12263697 - 12384377
120681
ENSAPLT00000018207
12263697 - 12384377
120681
ENSAPLT00000008964
12263697 - 12421219
157523
ENSAPLT00000040467
12263697 - 12421219
157523
ENSAPLT00000035425
12263697 - 12396174
132478