About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_12306942_12308107_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12306942 - 12308107
Intron Length:
1166

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAG
U12 Branch Point Sequence:
CAATGGGCAACT
Flanking Amino Acid:
HPRVDWKRPKYTSALTYDGV
Intron Amino Acid Position:
219

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99.3
1.16
0.7
90.9
28.7
Major BPS
54
0.1
1.4
61.7
34.1
Major PPT
87.7
0.85
0.6
81.3
30.7
Minor 5ss
27.1
-2.6
3.8
41.5
45.1
Minor BPS
35
-1
2.7
53.78
47.2

Associated Gene:

Gene:
GRIA1
Ensembl Gene ID:
ENSAPLG00000008617
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019166
12263697 - 12384377
120681
ENSAPLT00000018207
12263697 - 12384377
120681
ENSAPLT00000040467
12263697 - 12421219
157523
ENSAPLT00000008964
12263697 - 12421219
157523
ENSAPLT00000035425
12263697 - 12396174
132478
ENSAPLT00000031091
12263697 - 12384377
120681