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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_12308270_12320477_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12308270 - 12320477
Intron Length:
12208

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
TCTCCTGTACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TCTCCTGTACCA
Flanking Amino Acid:
NGYHYILANLGFMDIDLTKF
Intron Amino Acid Position:
165

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
72.8
34.4
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
72.6
0.51
1
65.8
39.7
Minor 5ss
34.3
-1.8
2.8
37.6
42.2
Minor BPS
47.4
-0.2
2.2
63.93
43

Associated Gene:

Gene:
GRIA1
Ensembl Gene ID:
ENSAPLG00000008617
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019166
12263697 - 12384377
120681
ENSAPLT00000018207
12263697 - 12384377
120681
ENSAPLT00000040467
12263697 - 12421219
157523
ENSAPLT00000008964
12263697 - 12421219
157523
ENSAPLT00000035425
12263697 - 12396174
132478
ENSAPLT00000031091
12263697 - 12384377
120681