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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_12325611_12327020_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12325611 - 12327020
Intron Length:
1410

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
CTTCCCGTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTCTAT
U12 Branch Point Sequence:
CTTCCCGTCACA
Flanking Amino Acid:
KFVYIYDADRGLSVLQKVLD
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
1
72.3
39.5
Major BPS
49.5
-0
1.3
50.1
43.7
Major PPT
74.3
0.55
0.8
67.8
32.3
Minor 5ss
34.1
-1.8
2.9
36.4
40.6
Minor BPS
48.8
-0.1
2.4
68.36
44.1

Associated Gene:

Gene:
GRIA1
Ensembl Gene ID:
ENSAPLG00000008617
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019166
12263697 - 12384377
120681
ENSAPLT00000018207
12263697 - 12384377
120681
ENSAPLT00000040467
12263697 - 12421219
157523
ENSAPLT00000008964
12263697 - 12421219
157523
ENSAPLT00000035425
12263697 - 12396174
132478
ENSAPLT00000031091
12263697 - 12384377
120681