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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_12327261_12381893_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12327261 - 12381893
Intron Length:
54633

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTAGC
5'SS Class:
major
3'SS Sequence:
TCTGCTCCTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
GCTCTCATGACA
Flanking Amino Acid:
MTYTFCSQFSKGVY
Intron Amino Acid Position:
5

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1.1
69.5
41.3
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
79
0.65
0.8
69.8
36.7
Minor 5ss
39
-1.2
2.8
55.8
41.5
Minor BPS
50.4
0.01
1.6
61.33
38.3

Associated Gene:

Gene:
GRIA1
Ensembl Gene ID:
ENSAPLG00000008617
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008964
12263697 - 12421219
157523
ENSAPLT00000040467
12263697 - 12421219
157523
ENSAPLT00000035425
12263697 - 12396174
132478
ENSAPLT00000031091
12263697 - 12384377
120681
ENSAPLT00000019166
12263697 - 12384377
120681