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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_12327261_12384105_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12327261 - 12384105
Intron Length:
56845

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTGCG
5'SS Class:
strong_major
3'SS Sequence:
TCTGCTCCTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
GCTCTCATGACA
Flanking Amino Acid:
GANFPNNIQIVCSQFSKGVY
Intron Amino Acid Position:
28

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
74.9
35.3
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
79
0.65
0.8
69.8
36.7
Minor 5ss
27.6
-2.6
3
32.2
42.5
Minor BPS
50.4
0.01
1.6
61.33
38.3

Associated Gene:

Gene:
GRIA1
Ensembl Gene ID:
ENSAPLG00000008617
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018207
12263697 - 12384377
120681