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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_12382032_12384105_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12382032 - 12384105
Intron Length:
2074

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTGCG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAG
U12 Branch Point Sequence:
GTGCTCAGACCT
Flanking Amino Acid:
GANFPNNIQIGGLFPNQQSQ
Intron Amino Acid Position:
28

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
74.9
35.3
Major BPS
55.8
0.14
1.6
65.3
43.7
Major PPT
87.9
0.85
0.6
81.4
30.6
Minor 5ss
27.6
-2.6
3
32.2
42.5
Minor BPS
42.8
-0.4
1.9
59.86
43

Associated Gene:

Gene:
GRIA1
Ensembl Gene ID:
ENSAPLG00000008617
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031091
12263697 - 12384377
120681
ENSAPLT00000019166
12263697 - 12384377
120681