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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_12511990_12512888_R

Intron Information:

Intron Rank:
141282
Intron Class:
major
Intron Phase:
Intron Coordinates:
12511990 - 12512888
Intron Length:
899

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTACGTTTG
5'SS Class:
major
3'SS Sequence:
CTTCTCCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
GCTGCCATGACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
71.6
40.8
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
85.5
0.8
0.7
77
31.7
Minor 5ss
42.9
-0.8
3
54.6
44.9
Minor BPS
53.7
0.11
1.8
64.15
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023361
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019457
12511684 - 12519287
7604