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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_12519236_12531136_R

Intron Information:

Intron Rank:
141287
Intron Class:
major
Intron Phase:
Intron Coordinates:
12519236 - 12531136
Intron Length:
11901

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTAGGTACC
5'SS Class:
major
3'SS Sequence:
CCATTTTATACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CATATTTTAAAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.9
0.4
1.1
64.5
39.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
77.3
0.61
0.9
72.2
36.8
Minor 5ss
38.2
-1.3
3
52.2
38.7
Minor BPS
51.9
-0
1.5
53.88
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023361
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035328
12513893 - 12531459
17567