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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_12588426_12595866_R

Intron Information:

Intron Rank:
141284
Intron Class:
major
Intron Phase:
Intron Coordinates:
12588426 - 12595866
Intron Length:
7441

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTGTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATTAT
U12 Branch Point Sequence:
TTCCCCTTCTTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.7
80.2
27.1
Major BPS
75.9
0.64
1
66.1
40.5
Major PPT
84.2
0.77
0.8
80.6
31.5
Minor 5ss
27.5
-2.6
3
32.5
42.3
Minor BPS
42.5
-0.4
3.6
72.9
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023361
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020581
12588042 - 12603963
15922
ENSAPLT00000043596
12518899 - 12596125
77227
ENSAPLT00000042403
12588042 - 12603963
15922