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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_12596073_12596393_R

Intron Information:

Intron Rank:
141289
Intron Class:
major
Intron Phase:
Intron Coordinates:
12596073 - 12596393
Intron Length:
321

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TGTCGCTTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
TTTGCAAAAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
82.4
29.8
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
79.7
0.67
0.9
73
37.3
Minor 5ss
41.2
-1
2.9
57.1
47.2
Minor BPS
44.5
-0.3
2.3
71.49
44.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023361
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042403
12588042 - 12603963
15922