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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_12596426_12603755_R

Intron Information:

Intron Rank:
141290
Intron Class:
major
Intron Phase:
Intron Coordinates:
12596426 - 12603755
Intron Length:
7330

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGCTATA
5'SS Class:
major
3'SS Sequence:
TTCATATTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTCAT
U12 Branch Point Sequence:
GATTGTCTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.7
0.42
1.2
70.7
41.3
Major BPS
79.8
0.74
0.9
81.3
29.9
Major PPT
82
0.72
0.9
73.5
40.8
Minor 5ss
43.6
-0.7
3
56.3
43.3
Minor BPS
52.3
0.15
2.1
74.69
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023361
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042403
12588042 - 12603963
15922