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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_12667161_12668093_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12667161 - 12668093
Intron Length:
933

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGCTT
5'SS Class:
strong_major
3'SS Sequence:
CTTGTTCTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACAAAT
U12 Branch Point Sequence:
TTCTCCTTGTTC
Flanking Amino Acid:
NIFNLIHVVSGVFFYLSSAV
Intron Amino Acid Position:
311

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
75.8
39.8
Major BPS
57.1
0.18
1
62.9
30.6
Major PPT
80.8
0.69
0.8
72.9
37.4
Minor 5ss
36
-1.6
3.6
55.8
48.4
Minor BPS
47.7
-0.2
3.5
73.15
38.8

Associated Gene:

Gene:
NMUR2
Ensembl Gene ID:
ENSAPLG00000008762
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009110
12660657 - 12668353
7697